1. What are DNA motifs? 2. What can DMINDA2 do in motif analysis? 3. How does DOOR2 database support DMINDA2? 4. What kinds of formats of input DNA sequences are acceptable for DMINDA2? 5. What kinds of formats of motifs are acceptable as input for DMINDA2? 6. What is a position weight matrix (PWM)? 7. What is a Position-Specific Scoring Matrix (PSSM)? 8. What is the information content of a PWM? 9. What is GOST? 10. What is a regulon and why is it important? 11. How do you identify motifs in prokaryotic genomes with a phylogenetic footprinting framework? 12. How do you perform bacterial regulon modeling and prediction based on systematic motif analyses? 13. How do you identify de-novo motifs? 14. How do you refine the predicted motifs? 15. How do you perform motif scanning for additional motif instances across a genome based on known or predicted motifs? 16. What is a background genome? 17. How do you perform motif comparison between predicted motifs and annotated motifs in motif databases? 18. What is the theoretical complexity of the back-end algorithms and acutal computational capability of DMINDA2? 19. How do you perform motif clustering on DMINDA2? 20. How do you perform motif co-occurrence analysis? 21. Where can I get the algorithm parameters for my submitted job? 22. Where can we download the source codes of your programs along with their documentations? 23. What are the performances of your motif analysis functions compared to other programs? 24. Do I have to leave my email address for retrieving the results? 25. How to cite your papers?